nlsr::SequencingManager Class Reference

#include <sequencing-manager.hpp>

Public Member Functions
	SequencingManager ()
uint64_t	getNameLsaSeq () const
void	setNameLsaSeq (uint64_t nlsn)
uint64_t	getAdjLsaSeq () const
void	setAdjLsaSeq (uint64_t alsn)
uint64_t	getCorLsaSeq () const
void	setCorLsaSeq (uint64_t clsn)
void	increaseNameLsaSeq ()
void	increaseAdjLsaSeq ()
void	increaseCorLsaSeq ()
void	writeSeqNoToFile () const
void	initiateSeqNoFromFile (int hypState)
void	setSeqFileDirectory (std::string filePath)
	Set the sequence file directory. More...
void	writeLog () const

Detailed Description

Definition at line 35 of file sequencing-manager.hpp.

Constructor & Destructor Documentation

nlsr::SequencingManager::SequencingManager ( )

inline

Definition at line 38 of file sequencing-manager.hpp.

Member Function Documentation

uint64_t nlsr::SequencingManager::getAdjLsaSeq ( ) const

inline

Definition at line 59 of file sequencing-manager.hpp.

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uint64_t nlsr::SequencingManager::getCorLsaSeq ( ) const

inline

Definition at line 71 of file sequencing-manager.hpp.

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uint64_t nlsr::SequencingManager::getNameLsaSeq ( ) const

inline

Definition at line 47 of file sequencing-manager.hpp.

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void nlsr::SequencingManager::increaseAdjLsaSeq ( )

inline

Definition at line 89 of file sequencing-manager.hpp.

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void nlsr::SequencingManager::increaseCorLsaSeq ( )

inline

Definition at line 95 of file sequencing-manager.hpp.

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void nlsr::SequencingManager::increaseNameLsaSeq ( )

inline

Definition at line 83 of file sequencing-manager.hpp.

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void nlsr::SequencingManager::initiateSeqNoFromFile

(

int

hypState

)

Definition at line 51 of file sequencing-manager.cpp.

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void nlsr::SequencingManager::setAdjLsaSeq ( uint64_t  alsn )

inline

Definition at line 65 of file sequencing-manager.hpp.

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void nlsr::SequencingManager::setCorLsaSeq ( uint64_t  clsn )

inline

Definition at line 77 of file sequencing-manager.hpp.

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void nlsr::SequencingManager::setNameLsaSeq ( uint64_t  nlsn )

inline

Definition at line 53 of file sequencing-manager.hpp.

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void nlsr::SequencingManager::setSeqFileDirectory

(

std::string

filePath

)

Set the sequence file directory.

If the string is empty, home directory is set as sequence file directory

Parameters

filePath

The directory where sequence file will be stored

Definition at line 113 of file sequencing-manager.cpp.

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void nlsr::SequencingManager::writeLog

(

)

const

Definition at line 128 of file sequencing-manager.cpp.

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void nlsr::SequencingManager::writeSeqNoToFile

(

)

const

Definition at line 38 of file sequencing-manager.cpp.

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